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[BGS04]

H.P.J. Bolton, A.A. Groenwold, and J.A. Snyman. The application of a unified bayesian stopping criterion in competing parallel algorithms for global optimization. Computers and Mathematics with Applications, 48(3):549 – 560, 2004. URL: http://www.sciencedirect.com/science/article/pii/S0898122104840768, doi:https://doi.org/10.1016/j.camwa.2003.09.030.

[Chi14]

John W. Chinneck. Practical Optimization: a Gentle Introduction. 2014.

[CFRS07]

Carsten Conradi, Dietrich Flockerzi, Jörg Raisch, and Jörg Stelling. Subnetwork analysis reveals dynamic features of complex (bio)chemical networks. Proceedings of the National Academy of Sciences, 104(49):19175–19180, 2007. URL: https://www.pnas.org/content/104/49/19175, arXiv:https://www.pnas.org/content/104/49/19175.full.pdf, doi:10.1073/pnas.0705731104.

[Fei79]

Martin Feinberg. Lectures on chemical reaction networks. notes of lectures given at the mathematics research center, university of wisconsin. https://crnt.osu.edu/LecturesOnReactionNetworks, 1979.

[FSW+16]

Song Feng, Meritxell Sáez, Carsten Wiuf, Elisenda Feliu, and Orkun Soyer. Core signalling motif displaying multistability through multi-state enzymes. Journal of the Royal Society Interface, 13:, 10 2016. doi:10.1098/rsif.2016.0524.

[HC87]

Jean-François Hervagault and Stéphane Canu. Bistability and irreversible transitions in a simple substrate cycle. Journal of Theoretical Biology, 127(4):439 – 449, 1987. URL: http://www.sciencedirect.com/science/article/pii/S0022519387801418, doi:https://doi.org/10.1016/S0022-5193(87)80141-8.

[OGM+06]

Fernando Ortega, José L. Garcés, Francesc Mas, Boris N. Kholodenko, and Marta Cascante. Bistability from double phosphorylation in signal transduction. The FEBS Journal, 273(17):3915–3926, 2006. doi:10.1111/j.1742-4658.2006.05394.x.

[OMBA09]

Irene Otero-Muras, Julio R. Banga, and Antonio A. Alonso. Exploring multiplicity conditions in enzymatic reaction networks. Biotechnology Progress, 25(3):619–631, 2009. URL: https://aiche.onlinelibrary.wiley.com/doi/abs/10.1002/btpr.112, arXiv:https://aiche.onlinelibrary.wiley.com/doi/pdf/10.1002/btpr.112, doi:10.1002/btpr.112.

[OMYS14]

Irene Otero-Muras, Pencho Yordanov, and Joerg Stelling. A method for inverse bifurcation of biochemical switches: inferring parameters from dose response curves. BMC Systems Biology, 8(1):114, 2014. URL: https://doi.org/10.1186/s12918-014-0114-2, doi:10.1186/s12918-014-0114-2.

[OMYS17]

Irene Otero-Muras, Pencho Yordanov, and Joerg Stelling. Chemical reaction network theory elucidates sources of multistability in interferon signaling. PLos computational biology, 2017.

[SF87]

J. A. Snyman and L. P. Fatti. A multi-start global minimization algorithm with dynamic search trajectories. Journal of Optimization Theory and Applications, 54(1):121–141, 1987. URL: https://doi.org/10.1007/BF00940408, doi:10.1007/BF00940408.

[SBG+15]

Endre T. Somogyi, Jean-Marie Bouteiller, James A. Glazier, Matthias König, J. Kyle Medley, Maciej H. Swat, and Herbert M. Sauro. libRoadRunner: a high performance SBML simulation and analysis library. Bioinformatics, 31(20):3315–3321, 06 2015. URL: https://doi.org/10.1093/bioinformatics/btv363, arXiv:http://oup.prod.sis.lan/bioinformatics/article-pdf/31/20/3315/17087875/btv363.pdf, doi:10.1093/bioinformatics/btv363.